If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 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'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ), 'gf_id' => 'HOM05D000609', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000609' ), 'data_identifier' => 'HOM05D000609', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000609', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '929', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p00660' => 'bna', 'A01p19540' => 'bna', 'A02p21960' => 'bna', 'A02p43690' => 'bna', 'A03p57840' => 'bna', 'A03p65870' => 'bna', 'A04p08530' => 'bna', 'A04p16710' => 'bna', 'A05p23310' => 'bna', 'A06p31960' => 'bna', 'A06p31970' => 'bna', 'A07p27710' => 'bna', 'A07p43310' => 'bna', 'A08p20210' => 'bna', 'A08p23350' => 'bna', 'A09p14320' => 'bna', 'A09p14740' => 'bna', 'A09p42580' => 'bna', 'A09p58660' => 'bna', 'Aa31LG1G16840' => 'aar', 'Aa31LG2G1340' => 'aar', 'Aa31LG2G22040' => 'aar', 'Aa31LG4G8120' => 'aar', 'Aa31LG6G15490' => 'aar', 'Aa31LG6G8940' => 'aar', 'Aa31LG7G14530' => 'aar', 'Aa31LG7G6150' => 'aar', 'Aa31LG9G4020' => 'aar', 'Actinidia09869' => 'ach', 'Actinidia10308' => 'ach', 'Actinidia11051' => 'ach', 'Actinidia22149' => 'ach', 'Actinidia22728' => 'ach', 'Actinidia27322' => 'ach', 'Actinidia30757' => 'ach', 'Actinidia33182' => 'ach', 'Actinidia35862' => 'ach', 'Ah.02g122170' => 'amhyb', 'Ah.05g170270' => 'amhyb', 'Ah.06g183500' => 'amhyb', 'Ah.07g197320' => 'amhyb', 'Ah.12g052490' => 'amhyb', 'AL1G35640' => 'aly', 'AL1G50830' => 'aly', 'AL2G10480' => 'aly', 'AL2G38380' => 'aly', 'AL3G54150' => 'aly', 'AL4G11690' => 'aly', 'AL7G11990' => 'aly', 'AL7G24460' => 'aly', 'AL7G42950' => 'aly', 'AL8G42630' => 'aly', 'Aqoxy2G03858' => 'aox', 'Aqoxy4G01198' => 'aox', 'Aqoxy5G04204' => 'aox', 'Aqoxy6G00592' => 'aox', 'Aqoxy6G00593' => 'aox', 'arahy.Tifrunner.gnm1.ann1.17GHQZ' => 'arhy', 'AT1G22190' => 'ath', 'AT1G36060' => 'ath', 'AT1G64380' => 'ath', 'AT1G78080' => 'ath', 'AT2G20880' => 'ath', 'AT2G22200' => 'ath', 'AT4G13620' => 'ath', 'AT4G28140' => 'ath', 'AT4G39780' => 'ath', 'AT5G65130' => 'ath', 'ATR0320G012' => 'atr', 'ATR0564G067' => 'atr', 'ATR0680G009' => 'atr', 'ATR1145G043' => 'atr', 'Atru.chr13.1231' => 'acertr', 'Atru.chr4.125' => 'acertr', 'Atru.chr4.1701' => 'acertr', 'Atru.chr6.3013' => 'acertr', 'Atru.chr9.2009' => 'acertr', 'AUR62002024' => 'cqu', 'AUR62003776' => 'cqu', 'AUR62010831' => 'cqu', 'AUR62018592' => 'cqu', 'AUR62018918' => 'cqu', 'AUR62019829' => 'cqu', 'AUR62020826' => 'cqu', 'AUR62027727' => 'cqu', 'AUR62037338' => 'cqu', 'AUR62044004' => 'cqu', 'BcaB02g07143' => 'bca', 'BcaB02g07144' => 'bca', 'BcaB02g07145' => 'bca', 'BcaB02g07146' => 'bca', 'BcaB02g09866' => 'bca', 'BcaB02g09877' => 'bca', 'BcaB03g12557' => 'bca', 'BcaB03g13644' => 'bca', 'BcaB03g15973' => 'bca', 'BcaB03g16064' => 'bca', 'BcaB05g25096' => 'bca', 'BcaB06g29642' => 'bca', 'BcaB07g29776' => 'bca', 'BcaB07g29778' => 'bca', 'BcaB07g31459' => 'bca', 'BcaB07g31506' => 'bca', 'BcaB07g32238' => 'bca', 'BcaB08g34947' => 'bca', 'BcaC01g02743' => 'bca', 'BcaC01g02744' => 'bca', 'BcaC02g08680' => 'bca', 'BcaC02g08727' => 'bca', 'BcaC02g09402' => 'bca', 'BcaC03g15788' => 'bca', 'BcaC03g18306' => 'bca', 'BcaC04g22564' => 'bca', 'BcaC04g22626' => 'bca', 'BcaC05g26146' => 'bca', 'BcaC05g27696' => 'bca', 'BcaC06g32643' => 'bca', 'BcaC07g38315' => 'bca', 'BcaC07g41187' => 'bca', 'BcaC07g41188' => 'bca', 'BcaC08g45439' => 'bca', 'BcaC08g47381' => 'bca', 'BcaC09g50511' => 'bca', 'BcaC09g51687' => 'bca', 'BcaNung00899' => 'bca', 'BcaNung01593' => 'bca', 'BcaNung02310' => 'bca', 'BcaNung03393' => 'bca', 'BcaNung05328' => 'bca', 'BolC1t00081H' => 'bol', 'BolC1t01005H' => 'bol', 'BolC1t02404H' => 'bol', 'BolC2t09547H' => 'bol', 'BolC2t12450H' => 'bol', 'BolC3t18361H' => 'bol', 'BolC3t20092H' => 'bol', 'BolC4t25807H' => 'bol', 'BolC4t26716H' => 'bol', 'BolC5t30829H' => 'bol', 'BolC5t32408H' => 'bol', 'BolC6t38233H' => 'bol', 'BolC6t40226H' => 'bol', 'BolC7t42694H' => 'bol', 'BolC7t46073H' => 'bol', 'BolC7t46074H' => 'bol', 'BolC7t46075H' => 'bol', 'BolC7t46707H' => 'bol', 'BolC8t48739H' => 'bol', 'BolC8t51758H' => 'bol', 'BolC9t54622H' => 'bol', 'BolC9t54682H' => 'bol', 'BraA01t00072Z' => 'bra', 'BraA01t01891Z' => 'bra', 'BraA02t07201Z' => 'bra', 'BraA02t09293Z' => 'bra', 'BraA03t14848Z' => 'bra', 'BraA03t15639Z' => 'bra', 'BraA04t16546Z' => 'bra', 'BraA04t17304Z' => 'bra', 'BraA05t21195Z' => 'bra', 'BraA06t26128Z' => 'bra', 'BraA06t26129Z' => 'bra', 'BraA07t30413Z' => 'bra', 'BraA07t31852Z' => 'bra', 'BraA08t33980Z' => 'bra', 'BraA08t34289Z' => 'bra', 'BraA09t37079Z' => 'bra', 'BraA09t37120Z' => 'bra', 'BraA09t39733Z' => 'bra', 'BraA09t41252Z' => 'bra', 'C01p00790' => 'bna', 'C01p10460' => 'bna', 'C01p24560' => 'bna', 'C02p35300' => 'bna', 'C02p63820' => 'bna', 'C03p60990' => 'bna', 'C03p61000' => 'bna', 'C03p78320' => 'bna', 'C04p42280' => 'bna', 'C04p51260' => 'bna', 'C05p21310' => 'bna', 'C05p36770' => 'bna', 'C06p30690' => 'bna', 'C06p52030' => 'bna', 'C07p55960' => 'bna', 'C07p55980' => 'bna', 'C07p62970' => 'bna', 'C08p10660' => 'bna', 'C08p41950' => 'bna', 'C09p17220' => 'bna', 'C09p17850' => 'bna', 'CAN.G1211.2' => 'can', 'CAN.G1635.8' => 'can', 'CAN.G239.3' => 'can', 'CAN.G248.38' => 'can', 'CAN.G517.1' => 'can', 'CAN.G532.114' => 'can', 'CAN.G64.6' => 'can', 'CAN.G792.41' => 'can', 'CANSAT01G1505' => 'cansat', 'CANSAT08G0001' => 'cansat', 'CANSAT21G0607' => 'cansat', 'CANSAT25G0784' => 'cansat', 'CANSAT56G0835' => 'cansat', 'CANSAT78G0126' => 'cansat', 'CARHR022540' => 'chi', 'CARHR034670' => 'chi', 'CARHR046560' => 'chi', 'CARHR071540' => 'chi', 'CARHR111650' => 'chi', 'CARHR113390' => 'chi', 'CARHR219330' => 'chi', 'CARHR235850' => 'chi', 'CARHR246930' => 'chi', 'CARHR279040' => 'chi', 'Carub.0001s2174' => 'cru', 'Carub.0001s3356' => 'cru', 'Carub.0002s0040' => 'cru', 'Carub.0002s2497' => 'cru', 'Carub.0003s3555' => 'cru', 'Carub.0004s0136' => 'cru', 'Carub.0007s0168' => 'cru', 'Carub.0007s1263' => 'cru', 'Carub.0007s2891' => 'cru', 'Carub.0008s2597' => 'cru', 'Ca_01509_v3' => 'car', 'Ca_10412_v3' => 'car', 'Ca_15237_v3' => 'car', 'Ca_17727_v3' => 'car', 'Ca_24516_v3' => 'car', 'Ca_25833_v3' => 'car', 'Ca_27518_v3' => 'car', 'Cc03_g07870' => 'ccan', 'Cc05_g06840' => 'ccan', 'Cc07_g15390' => 'ccan', 'Cc08_g15980' => 'ccan', 'Cc10_g07460' => 'ccan', 'CDE03G0476' => 'cde', 'CDE05G1917' => 'cde', 'CDE06G0382' => 'cde', 'CDE08G0119' => 'cde', 'CDE10G0922' => 'cde', 'CDE10G1190' => 'cde', 'CDE10G1363' => 'cde', 'Cfa002684' => 'cfa', 'Cfa014583' => 'cfa', 'Cfa014912' => 'cfa', 'Cfa015912' => 'cfa', 'Cfa023583' => 'cfa', 'Ciclev10001563m.g' => 'ccl', 'Ciclev10007069m.g' => 'ccl', 'Ciclev10015144m.g' => 'ccl', 'Ciclev10021265m.g' => 'ccl', 'Ciclev10025961m.g' => 'ccl', 'CiPaw.01G120900' => 'cil', 'CiPaw.02G066200' => 'cil', 'CiPaw.03G140400' => 'cil', 'CiPaw.03G174500' => 'cil', 'CiPaw.04G097700' => 'cil', 'CiPaw.04G124700' => 'cil', 'CiPaw.05G236200' => 'cil', 'CiPaw.06G020700' => 'cil', 'CiPaw.11G122100' => 'cil', 'CiPaw.12G083900' => 'cil', 'ClCG01G001930' => 'cla', 'ClCG01G018900' => 'cla', 'ClCG02G001100' => 'cla', 'ClCG02G017520' => 'cla', 'ClCG06G007820' => 'cla', 'ClCG07G014980' => 'cla', 'ClCG08G010990' => 'cla', 'ClCG11G015420' => 'cla', 'COL.COLO4_06984' => 'col', 'COL.COLO4_09890' => 'col', 'COL.COLO4_09940' => 'col', 'COL.COLO4_10687' => 'col', 'COL.COLO4_16434' => 'col', 'Cpa.g.sc34.132' => 'cpa', 'Cpa.g.sc36.112' => 'cpa', 'Cpa.g.sc71.10' => 'cpa', 'Cpa.g.sc79.43' => 'cpa', 'Cpa.g.sc996.1' => 'cpa', 'CsaV3_1G022920' => 'csa', 'CsaV3_2G011540' => 'csa', 'CsaV3_4G006510' => 'csa', 'CsaV3_4G028670' => 'csa', 'CsaV3_5G002070' => 'csa', 'CsaV3_6G013050' => 'csa', 'CsaV3_6G045580' => 'csa', 'CsaV3_7G004340' => 'csa', 'CSS0000647' => 'camsi', 'CSS0003523' => 'camsi', 'CSS0008562' => 'camsi', 'CSS0011861' => 'camsi', 'CSS0012926' => 'camsi', 'CSS0013568' => 'camsi', 'CSS0015617' => 'camsi', 'CSS0016833' => 'camsi', 'CSS0022907' => 'camsi', 'CSS0038171' => 'camsi', 'CSS0038555' => 'camsi', 'DCAR_005039' => 'dca', 'DCAR_008717' => 'dca', 'DCAR_011508' => 'dca', 'DCAR_012730' => 'dca', 'DCAR_012996' => 'dca', 'DCAR_014234' => 'dca', 'DCAR_020448' => 'dca', 'DCAR_021235' => 'dca', 'DCAR_024472' => 'dca', 'DCAR_026614' => 'dca', 'DCAR_027706' => 'dca', 'DCAR_029885' => 'dca', 'Dinv01538' => 'din', 'Dinv12915' => 'din', 'Dinv13032' => 'din', 'Dinv21925' => 'din', 'Dinv23667' => 'din', 'Dinv23678' => 'din', 'Dinv27236' => 'din', 'Dinv37539' => 'din', 'Dinv38232' => 'din', 'Dinv38839' => 'din', 'Dinv44756' => 'din', 'Duzib041G0297' => 'dzi', 'Duzib052G0967' => 'dzi', 'Duzib068G0150' => 'dzi', 'Duzib084G0507' => 'dzi', 'Duzib093G0350' => 'dzi', 'Duzib116G0733' => 'dzi', 'Duzib132G0836' => 'dzi', 'Duzib147G1624' => 'dzi', 'Duzib151G0668' => 'dzi', 'Duzib187G0777' => 'dzi', 'Duzib187G1519' => 'dzi', 'Duzib205G0449' => 'dzi', 'Duzib212G0619' => 'dzi', 'Duzib248G0477' => 'dzi', 'Duzib264G1009' => 'dzi', 'Duzib268G1214' => 'dzi', 'ECA232G2268' => 'eca', 'ECA233G3151' => 'eca', 'ECA233G4750' => 'eca', 'ECA233G5547' => 'eca', 'ECA236G0244' => 'eca', 'ECA238G0368' => 'eca', 'ECA240G1235' => 'eca', 'ECA246G1856' => 'eca', 'ECA246G4012' => 'eca', 'ECA247G0255' => 'eca', 'ECA248G3568' => 'eca', 'EL10Ac1g01253' => 'bvu', 'EL10Ac3g07485' => 'bvu', 'EL10Ac5g12906' => 'bvu', 'EL10Ac6g15085' => 'bvu', 'EL10Ac9g20699' => 'bvu', 'Eucgr.D01731' => 'egr', 'Eucgr.E00857' => 'egr', 'Eucgr.F00497' => 'egr', 'Eucgr.F02440' => 'egr', 'Eucgr.H02782' => 'egr', 'Eucgr.I00422' => 'egr', 'Eucgr.K00961' => 'egr', 'Eucgr.L03532' => 'egr', 'FAN04G1328' => 'fan', 'FAN04G1489' => 'fan', 'FAN05G4118' => 'fan', 'FAN07G1283' => 'fan', 'FAN08G0222' => 'fan', 'FAN08G3397' => 'fan', 'FAN12G3916' => 'fan', 'FAN13G0874' => 'fan', 'FAN13G3325' => 'fan', 'FAN17G1695' => 'fan', 'FAN18G0634' => 'fan', 'FAN18G0766' => 'fan', 'FAN18G3576' => 'fan', 'FAN19G2666' => 'fan', 'FAN22G0052' => 'fan', 'FAN23G0016' => 'fan', 'FAN26G2713' => 'fan', 'FAN28G0095' => 'fan', 'FvH4_1g21210' => 'fve', 'FvH4_5g04470' => 'fve', 'FvH4_5g37820' => 'fve', 'FvH4_6g26090' => 'fve', 'Glyma.01G225000' => 'gma', 'Glyma.04G103900' => 'gma', 'Glyma.05G179900' => 'gma', 'Glyma.06G105000' => 'gma', 'Glyma.06G295300' => 'gma', 'Glyma.08G137600' => 'gma', 'Glyma.10G193400' => 'gma', 'Glyma.11G018100' => 'gma', 'Glyma.11G239200' => 'gma', 'Glyma.12G110400' => 'gma', 'Glyma.12G203100' => 'gma', 'Glyma.13G088100' => 'gma', 'Glyma.13G298600' => 'gma', 'Glyma.14G171500' => 'gma', 'Glyma.18G018200' => 'gma', 'Glyma.20G197000' => 'gma', 'Gohir.A01G016300' => 'ghi', 'Gohir.A02G075900' => 'ghi', 'Gohir.A02G144200' => 'ghi', 'Gohir.A03G157800' => 'ghi', 'Gohir.A04G104800' => 'ghi', 'Gohir.A05G227900' => 'ghi', 'Gohir.A06G037400' => 'ghi', 'Gohir.A08G110900' => 'ghi', 'Gohir.A09G190700' => 'ghi', 'Gohir.A09G205300' => 'ghi', 'Gohir.A10G125000' => 'ghi', 'Gohir.A11G024900' => 'ghi', 'Gohir.A11G200600' => 'ghi', 'Gohir.A12G079100' => 'ghi', 'Gohir.A12G138100' => 'ghi', 'Gohir.A12G236100' => 'ghi', 'Gohir.D01G016300' => 'ghi', 'Gohir.D02G083100' => 'ghi', 'Gohir.D03G036400' => 'ghi', 'Gohir.D04G144600' => 'ghi', 'Gohir.D05G230700' => 'ghi', 'Gohir.D06G038900' => 'ghi', 'Gohir.D08G130900' => 'ghi', 'Gohir.D09G185300' => 'ghi', 'Gohir.D09G199000' => 'ghi', 'Gohir.D10G141500' => 'ghi', 'Gohir.D11G024500' => 'ghi', 'Gohir.D11G223000' => 'ghi', 'Gohir.D12G142100' => 'ghi', 'Gohir.D12G237300' => 'ghi', 'Gorai.002G018000' => 'gra', 'Gorai.003G038200' => 'gra', 'Gorai.004G133800' => 'gra', 'Gorai.005G093500' => 'gra', 'Gorai.005G202900' => 'gra', 'Gorai.006G207800' => 'gra', 'Gorai.006G222600' => 'gra', 'Gorai.007G026200' => 'gra', 'Gorai.007G240700' => 'gra', 'Gorai.008G153600' => 'gra', 'Gorai.008G253900' => 'gra', 'Gorai.009G238800' => 'gra', 'Gorai.010G043200' => 'gra', 'Gorai.011G157500' => 'gra', 'Gorai.012G130600' => 'gra', 'GSVIVG01002262001' => 'vvi', 'GSVIVG01009007001' => 'vvi', 'GSVIVG01019519001' => 'vvi', 'GSVIVG01021060001' => 'vvi', 'HanXRQChr01g0022321' => 'han', 'HanXRQChr02g0044391' => 'han', 'HanXRQChr02g0047911' => 'han', 'HanXRQChr02g0058911' => 'han', 'HanXRQChr04g0114871' => 'han', 'HanXRQChr05g0147181' => 'han', 'HanXRQChr05g0162171' => 'han', 'HanXRQChr06g0166521' => 'han', 'HanXRQChr07g0191481' => 'han', 'HanXRQChr11g0327691' => 'han', 'HanXRQChr11g0328411' => 'han', 'HanXRQChr14g0435991' => 'han', 'HanXRQChr15g0491961' => 'han', 'HanXRQChr16g0500251' => 'han', 'HanXRQChr17g0535231' => 'han', 'HanXRQChr17g0554691' => 'han', 'Haze_00582' => 'cav', 'Haze_07775' => 'cav', 'Haze_07777' => 'cav', 'Haze_08621' => 'cav', 'Haze_08622' => 'cav', 'Haze_11611' => 'cav', 'Haze_13135' => 'cav', 'Haze_18922' => 'cav', 'Haze_24955' => 'cav', 'Hma1.2p1_0011F.1_g007190' => 'hma', 'Hma1.2p1_0187F.1_g082150' => 'hma', 'Hma1.2p1_0229F.1_g097160' => 'hma', 'Hma1.2p1_0359F.1_g135286' => 'hma', 'Hma1.2p1_1201F.1_g266770' => 'hma', 'Hma1.2p1_2596F.1_g325090' => 'hma', 'Hma1.2p1_2596F.1_g325100' => 'hma', 'HPP92_004565' => 'vpl', 'HPP92_007618' => 'vpl', 'HPP92_011203' => 'vpl', 'HPP92_014532' => 'vpl', 'HPP92_016344' => 'vpl', 'HPP92_019311' => 'vpl', 'HPP92_024670' => 'vpl', 'Lalb_Chr03g0029301' => 'lal', 'Lalb_Chr05g0211591' => 'lal', 'Lalb_Chr06g0169771' => 'lal', 'Lalb_Chr08g0231161' => 'lal', 'Lalb_Chr08g0241941' => 'lal', 'Lalb_Chr09g0320671' => 'lal', 'Lalb_Chr09g0332531' => 'lal', 'Lalb_Chr10g0102251' => 'lal', 'Lalb_Chr11g0065511' => 'lal', 'Lalb_Chr11g0075291' => 'lal', 'Lalb_Chr12g0203731' => 'lal', 'Lalb_Chr14g0366811' => 'lal', 'Lalb_Chr16g0390641' => 'lal', 'Lalb_Chr17g0344111' => 'lal', 'Lalb_Chr22g0356501' => 'lal', 'Lalb_Chr23g0270641' => 'lal', 'Lj1g0010564' => 'lja', 'Lj1g0021142' => 'lja', 'Lj1P727T48' => 'lonja', 'Lj1P730T46' => 'lonja', 'Lj2P169T12' => 'lonja', 'Lj3g0013758' => 'lja', 'Lj3g0018434' => 'lja', 'Lj4g0018450' => 'lja', 'Lj4g0021122' => 'lja', 'Lj4P106T40' => 'lonja', 'Lj4P716T65' => 'lonja', 'Lj4P720T82' => 'lonja', 'Lj4P885T10' => 'lonja', 'Lj5g0014862' => 'lja', 'Lj6P553T14' => 'lonja', 'Lj8P114T18' => 'lonja', 'Lj8P194T39' => 'lonja', 'Lj8P209T20' => 'lonja', 'LjContig00312_ERROPOS870357g0025706' => 'lja', 'Lsat_1_v5_gn_1_4460' => 'lsa', 'Lsat_1_v5_gn_1_71921' => 'lsa', 'Lsat_1_v5_gn_3_10461' => 'lsa', 'Lsat_1_v5_gn_6_103940' => 'lsa', 'Lsat_1_v5_gn_6_12261' => 'lsa', 'Lsat_1_v5_gn_6_60300' => 'lsa', 'Lsat_1_v5_gn_6_84541' => 'lsa', 'Lsat_1_v5_gn_7_105441' => 'lsa', 'Lsat_1_v5_gn_8_132101' => 'lsa', 'Lsat_1_v5_gn_9_43700' => 'lsa', 'Manes.02G010700' => 'mes', 'Manes.02G154400' => 'mes', 'Manes.03G147500' => 'mes', 'Manes.12G087500' => 'mes', 'Manes.12G136800' => 'mes', 'Manes.13G093300' => 'mes', 'Manes.13G148300' => 'mes', 'Manes.15G053900' => 'mes', 'Manes.18G069000' => 'mes', 'Mapoly0009s0061' => 'mpo', 'Mapoly0053s0002' => 'mpo', 'Mapoly0090s0002' => 'mpo', 'MBI02_g36656_MAGBIO' => 'mbi', 'MBI05_g32461_MAGBIO' => 'mbi', 'MBI06_g05047_MAGBIO' => 'mbi', 'MBI07_g27255_MAGBIO' => 'mbi', 'MBI07_g38449_MAGBIO' => 'mbi', 'MBI11_g00137_MAGBIO' => 'mbi', 'MBI11_g36937_MAGBIO' => 'mbi', 'MBI17_g19525_MAGBIO' => 'mbi', 'MBI17_g19526_MAGBIO' => 'mbi', 'MBI17_g42660_MAGBIO' => 'mbi', 'MD04G1009000' => 'mdo', 'MD06G1105500' => 'mdo', 'MD08G1180200' => 'mdo', 'MD09G1252000' => 'mdo', 'MD14G1127700' => 'mdo', 'MD15G1326800' => 'mdo', 'MD15G1365500' => 'mdo', 'MD17G1244300' => 'mdo', 'Medtr1g090170' => 'mtr', 'Medtr2g090235' => 'mtr', 'Medtr3g074130' => 'mtr', 'Medtr5g009410' => 'mtr', 'Medtr5g062700' => 'mtr', 'Medtr8g090350' => 'mtr', 'MELO3C005747.2' => 'cme', 'MELO3C007769.2' => 'cme', 'MELO3C010425.2' => 'cme', 'MELO3C011364.2' => 'cme', 'MELO3C013593.2' => 'cme', 'MELO3C016285.2' => 'cme', 'MELO3C018744.2' => 'cme', 'MELO3C020448.2' => 'cme', 'Migut.A00662' => 'egut', 'Migut.C00009' => 'egut', 'Migut.E01248' => 'egut', 'Migut.H01065' => 'egut', 'Migut.L00108' => 'egut', 'Migut.M00859' => 'egut', 'Migut.N00388' => 'egut', 'Migut.N02912' => 'egut', 'MSTRG.11929' => 'ama', 'MSTRG.12310' => 'ama', 'MSTRG.13883' => 'ama', 'MSTRG.15216' => 'ama', 'MSTRG.15707' => 'ama', 'MSTRG.1808' => 'ama', 'MSTRG.22142' => 'ama', 'MSTRG.24470' => 'ama', 'MSTRG.2559' => 'ama', 'MSTRG.25666' => 'ama', 'MSTRG.3792' => 'ama', 'Nitab4.5_0000421g0100' => 'nta', 'Nitab4.5_0000512g0230' => 'nta', 'Nitab4.5_0000601g0120' => 'nta', 'Nitab4.5_0000662g0150' => 'nta', 'Nitab4.5_0000675g0010' => 'nta', 'Nitab4.5_0000898g0070' => 'nta', 'Nitab4.5_0000898g0170' => 'nta', 'Nitab4.5_0001231g0050' => 'nta', 'Nitab4.5_0001416g0060' => 'nta', 'Nitab4.5_0001992g0130' => 'nta', 'Nitab4.5_0002473g0040' => 'nta', 'Nitab4.5_0002526g0070' => 'nta', 'Nitab4.5_0002944g0120' => 'nta', 'Nitab4.5_0003022g0060' => 'nta', 'Nitab4.5_0003868g0010' => 'nta', 'Nitab4.5_0006479g0010' => 'nta', 'Nitab4.5_0007367g0050' => 'nta', 'Nitab4.5_0008661g0050' => 'nta', 'Nitab4.5_0026202g0010' => 'nta', 'Nn1g01853' => 'nnu', 'Nn1g04000' => 'nnu', 'Nn1g05310' => 'nnu', 'Nn1g06634' => 'nnu', 'Nn1g07883' => 'nnu', 'Nn3g20034' => 'nnu', 'Nn4g24337' => 'nnu', 'Oeu005423.1' => 'oeu', 'Oeu013805.1' => 'oeu', 'Oeu022372.1' => 'oeu', 'Oeu024548.2' => 'oeu', 'Oeu026526.1' => 'oeu', 'Oeu038565.1' => 'oeu', 'Oeu045794.1' => 'oeu', 'Oeu049028.1' => 'oeu', 'Oeu049029.1' => 'oeu', 'Oeu051802.2' => 'oeu', 'Oeu051803.1' => 'oeu', 'Oeu056591.2' => 'oeu', 'Oeu061487.1' => 'oeu', 'Os02g0638650' => 'osa', 'Os02g0752800' => 'osa', 'Os03g0191900' => 'osa', 'Os04g0529100' => 'osa', 'Os05g0572000' => 'osa', 'Os06g0222400' => 'osa', 'Os08g0408500' => 'osa', 'Os08g0521600' => 'osa', 'Os09g0369000' => 'osa', 'Os10g0371100' => 'osa', 'Peaxi162Scf00000g00441' => 'pax', 'Peaxi162Scf00041g00061' => 'pax', 'Peaxi162Scf00047g00524' => 'pax', 'Peaxi162Scf00074g00101' => 'pax', 'Peaxi162Scf00102g01713' => 'pax', 'Peaxi162Scf00132g00057' => 'pax', 'Peaxi162Scf00160g00148' => 'pax', 'Peaxi162Scf00422g00012' => 'pax', 'Peaxi162Scf02133g00004' => 'pax', 'PGR004G2677' => 'pgr', 'PGR031G3523' => 'pgr', 'PGR042G0081' => 'pgr', 'PGR042G1233' => 'pgr', 'PGR042G1808' => 'pgr', 'PGR044G2238' => 'pgr', 'PGR083G1223' => 'pgr', 'PGR142G3899' => 'pgr', 'PGSC0003DMG400005837' => 'stu', 'PGSC0003DMG400008538' => 'stu', 'PGSC0003DMG400009475' => 'stu', 'PGSC0003DMG400012154' => 'stu', 'PGSC0003DMG400015312' => 'stu', 'PGSC0003DMG400018352' => 'stu', 'PGSC0003DMG400020625' => 'stu', 'PGSC0003DMG400031294' => 'stu', 'PGSC0003DMG400041562' => 'stu', 'PGSC0003DMG401015315' => 'stu', 'Phvul.001G251200' => 'pvu', 'Phvul.002G163700' => 'pvu', 'Phvul.002G254500' => 'pvu', 'Phvul.005G105200' => 'pvu', 'Phvul.007G135300' => 'pvu', 'Phvul.008G172200' => 'pvu', 'Phvul.009G029600' => 'pvu', 'Phvul.011G118600' => 'pvu', 'Potri.001G092400' => 'ptr', 'Potri.001G315300' => 'ptr', 'Potri.002G094200' => 'ptr', 'Potri.003G139300' => 'ptr', 'Potri.005G077300' => 'ptr', 'Potri.005G168700' => 'ptr', 'Potri.007G090600' => 'ptr', 'Potri.013G135600' => 'ptr', 'Potri.017G055400' => 'ptr', 'Potri.019G102200' => 'ptr', 'Pp3c1_28430' => 'ppa', 'Pp3c1_36120' => 'ppa', 'Pp3c1_36129' => 'ppa', 'Pp3c20_3770' => 'ppa', 'Pp3c23_21450' => 'ppa', 'Pp3c2_11580' => 'ppa', 'Pp3c2_5620' => 'ppa', 'Pp3c2_5625' => 'ppa', 'Pp3c8_24200' => 'ppa', 'Prupe.1G008400' => 'ppe', 'Prupe.1G513600' => 'ppe', 'Prupe.3G009400' => 'ppe', 'Prupe.3G157100' => 'ppe', 'Prupe.5G117800' => 'ppe', 'Prupe.6G182200' => 'ppe', 'Psat0s2105g0240' => 'psa', 'Psat2g073880' => 'psa', 'Psat5g137480' => 'psa', 'Psat5g271720' => 'psa', 'Psat6g170920' => 'psa', 'Psat7g053920' => 'psa', 'PSO017G0724' => 'pso', 'PSO017G1143' => 'pso', 'PSO017G2092' => 'pso', 'PSO017G5468' => 'pso', 'PSO063G2393' => 'pso', 'PSO133G0026' => 'pso', 'PSO133G0115' => 'pso', 'PSO170G0436' => 'pso', 'PSO170G3512' => 'pso', 'PSO210G4526' => 'pso', 'PSO210G6649' => 'pso', 'PSO447G0069' => 'pso', 'PSO541G0465' => 'pso', 'PSO541G1431' => 'pso', 'QL02p030845' => 'qlo', 'QL02p056271' => 'qlo', 'QL06p024916' => 'qlo', 'QL08p038189' => 'qlo', 'QL12p036229' => 'qlo', 'RcHm_v2.0_Chr2g0115041' => 'rch', 'RcHm_v2.0_Chr2g0126301' => 'rch', 'RcHm_v2.0_Chr4g0415231' => 'rch', 'RcHm_v2.0_Chr7g0195031' => 'rch', 'RcHm_v2.0_Chr7g0239701' => 'rch', 'Rhsim02G0242500' => 'rsi', 'Rhsim03G0149600' => 'rsi', 'Rhsim06G0084700' => 'rsi', 'Rhsim06G0147200' => 'rsi', 'Rhsim06G0196100' => 'rsi', 'Rhsim07G0082700' => 'rsi', 'Rhsim09G0056900' => 'rsi', 'Rhsim10G0159000' => 'rsi', 'Sabra01G0068600' => 'sbr', 'Sabra02G0074300' => 'sbr', 'Sabra03G0100500' => 'sbr', 'Sabra05G0063700' => 'sbr', 'Sabra05G0125900' => 'sbr', 'Sabra07G0074300' => 'sbr', 'Sabra13G0114800' => 'sbr', 'Sabra16G0199500' => 'sbr', 'Sabra17G0046900' => 'sbr', 'Sabra17G0049100' => 'sbr', 'Sabra19G0113400' => 'sbr', 'SalBow1G1764' => 'sbo', 'SalBow1G4402' => 'sbo', 'SalBow1G7169' => 'sbo', 'SalBow3G0278' => 'sbo', 'SalBow3G1419' => 'sbo', 'SalBow5G0751' => 'sbo', 'SalBow5G2182' => 'sbo', 'SalBow7G2004' => 'sbo', 'SalBow8G5587' => 'sbo', 'Sc01g0000280' => 'sci', 'Sc01g0010260' => 'sci', 'Sc03g0002170' => 'sci', 'Sc12g0002900' => 'sci', 'Sc13g0000200' => 'sci', 'Sc21g0002610' => 'sci', 'Sc23g0000080' => 'sci', 'Sed0003166' => 'sed', 'Sed0004288' => 'sed', 'Sed0006998' => 'sed', 'Sed0014356' => 'sed', 'Sed0015719' => 'sed', 'Sed0016893' => 'sed', 'Sed0017774' => 'sed', 'Sed0020020' => 'sed', 'Sed0020153' => 'sed', 'Sed0021235' => 'sed', 'Sed0021354' => 'sed', 'Sed0023479' => 'sed', 'Sed0023784' => 'sed', 'Sed0025633' => 'sed', 'SEGI_06834' => 'sgi', 'SEGI_09509' => 'sgi', 'SEGI_15245' => 'sgi', 'SEGI_18264' => 'sgi', 'SEGI_35749' => 'sgi', 'SEGI_36382' => 'sgi', 'SGA_v2.0_scaffold109G31105' => 'sas', 'SGA_v2.0_scaffold111G31415' => 'sas', 'SGA_v2.0_scaffold216G42409' => 'sas', 'SGA_v2.0_scaffold305G47962' => 'sas', 'SGA_v2.0_scaffold47G17763' => 'sas', 'SGA_v2.0_scaffold84G26563' => 'sas', 'SGA_v2.0_scaffold96G28969' => 'sas', 'SHI11563' => 'shi', 'SMO174G0263' => 'smo', 'SMO197G0046' => 'smo', 'SMO356G0680' => 'smo', 'SMO358G0523' => 'smo', 'Solyc04g054910.4' => 'sly', 'Solyc04g072900.1' => 'sly', 'Solyc07g054220.1' => 'sly', 'Solyc08g008305.1' => 'sly', 'Solyc08g082210.4' => 'sly', 'Solyc09g091950.1' => 'sly', 'Solyc12g013660.3' => 'sly', 'Solyc12g056980.1' => 'sly', 'Sopen00g003270' => 'spe', 'Sopen02g034270' => 'spe', 'Sopen04g024720' => 'spe', 'Sopen04g029080' => 'spe', 'Sopen07g028150' => 'spe', 'Sopen08g004160' => 'spe', 'Sopen08g030500' => 'spe', 'Sopen09g034850' => 'spe', 'Sopen12g007010' => 'spe', 'Sp1g19690' => 'spa', 'Sp1g30610' => 'spa', 'Sp2g00350' => 'spa', 'Sp2g00370' => 'spa', 'Sp2g28210' => 'spa', 'Sp3g34150' => 'spa', 'Sp4g01260' => 'spa', 'Sp5g33210' => 'spa', 'Sp7g11330' => 'spa', 'Sp7g26090' => 'spa', 'Sp7g36120' => 'spa', 'TAR362G0716' => 'tar', 'TAR374G0239' => 'tar', 'TAR375G0867' => 'tar', 'TAR376G0265' => 'tar', 'TAR381G1046' => 'tar', 'TAR625G0681' => 'tar', 'TAR627G0231' => 'tar', 'TAR627G0740' => 'tar', 'TAR628G1355' => 'tar', 'TAR629G1026' => 'tar', 'TAR629G2339' => 'tar', 'TAR636G0487' => 'tar', 'TAR636G3507' => 'tar', 'THA.LOC104799123' => 'tha', 'THA.LOC104800157' => 'tha', 'THA.LOC104804157' => 'tha', 'THA.LOC104804827' => 'tha', 'THA.LOC104807702' => 'tha', 'THA.LOC104809334' => 'tha', 'THA.LOC104810880' => 'tha', 'THA.LOC104814487' => 'tha', 'THA.LOC104816881' => 'tha', 'THA.LOC104818489' => 'tha', 'THA.LOC104821868' => 'tha', 'THA.LOC104823612' => 'tha', 'THA.LOC104824714' => 'tha', 'Thecc.01G104200' => 'tca', 'Thecc.02G176800' => 'tca', 'Thecc.03G296600' => 'tca', 'Thecc.04G203500' => 'tca', 'Thecc.08G109900' => 'tca', 'Thhalv10000302m.g' => 'esa', 'Thhalv10002185m.g' => 'esa', 'Thhalv10003485m.g' => 'esa', 'Thhalv10005326m.g' => 'esa', 'Thhalv10008326m.g' => 'esa', 'Thhalv10018771m.g' => 'esa', 'Thhalv10023588m.g' => 'esa', 'Thhalv10025587m.g' => 'esa', 'Thhalv10025862m.g' => 'esa', 'Thhalv10025958m.g' => 'esa', 'TPR.G2163' => 'tpr', 'TPR.G22199' => 'tpr', 'TPR.G31386' => 'tpr', 'TPR.G31685' => 'tpr', 'TPR.G33735' => 'tpr', 'TPR.G35202' => 'tpr', 'TPR.G40707' => 'tpr', 'TWI09G1321' => 'twi', 'TWI12G1437' => 'twi', 'TWI15G1182' => 'twi', 'TWI18G0869' => 'twi', 'TWI56G1017' => 'twi', 'TWI73G0567' => 'twi', 'TWI74G1093' => 'twi', 'TWI75G1120' => 'twi', 'TWI77G0327' => 'twi', 'TWI81G1020' => 'twi', 'unitig_0.g1731' => 'ugi', 'unitig_22.g5808' => 'ugi', 'unitig_26.g9945' => 'ugi', 'unitig_32.g11614' => 'ugi', 'unitig_62.g23175' => 'ugi', 'unitig_62.g23176' => 'ugi', 'unitig_747.g21755' => 'ugi', 'unitig_748.g7411' => 'ugi', 'unitig_8.g3605' => 'ugi', 'vmacro00469' => 'vma', 'vmacro11835' => 'vma', 'vmacro12279' => 'vma', 'VMungo0251G1631' => 'vmu', 'VMungo0647G1064' => 'vmu', 'VMungo0720G0222' => 'vmu', 'VMungo1080G1501' => 'vmu', 'VMungo1127G1433' => 'vmu', 'VMungo1215G2270' => 'vmu', 'VMungo1309G1651' => 'vmu', 'VMungo1383G2412' => 'vmu', 'Zm00001eb007000' => 'zma', 'Zm00001eb027780' => 'zma', 'Zm00001eb035460' => 'zma', 'Zm00001eb035470' => 'zma', 'Zm00001eb035490' => 'zma', 'Zm00001eb042240' => 'zma', 'Zm00001eb068070' => 'zma', 'Zm00001eb075900' => 'zma', 'Zm00001eb112070' => 'zma', 'Zm00001eb185680' => 'zma', 'Zm00001eb194220' => 'zma', 'Zm00001eb248380' => 'zma', 'Zm00001eb255160' => 'zma', 'Zm00001eb296430' => 'zma', 'Zm00001eb311180' => 'zma', 'Zm00001eb344200' => 'zma', 'Zm00001eb372660' => 'zma', 'Zm00001eb401290' => 'zma', 'Zm00001eb427130' => 'zma' ) $gf_id = 'HOM05D000609' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000609' ) $data_identifier = 'HOM05D000609' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 9, 'ach' => (int) 9, 'amhyb' => (int) 5, 'aly' => (int) 10, 'aox' => (int) 5, 'arhy' => (int) 1, 'ath' => (int) 10, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 10, 'bca' => (int) 42, 'bol' => (int) 22, 'bra' => (int) 19, 'can' => (int) 8, 'cansat' => (int) 6, 'chi' => (int) 10, 'cru' => (int) 10, 'car' => (int) 7, 'ccan' => (int) 5, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 10, 'cla' => (int) 8, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 8, 'camsi' => (int) 11, 'dca' => (int) 12, 'din' => (int) 11, 'dzi' => (int) 16, 'eca' => (int) 11, 'bvu' => (int) 5, 'egr' => (int) 8, 'fan' => (int) 18, 'fve' => (int) 4, 'gma' => (int) 16, 'ghi' => (int) 30, 'gra' => (int) 15, 'vvi' => (int) 4, 'han' => (int) 16, 'cav' => (int) 9, 'hma' => (int) 7, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 8, 'lonja' => (int) 11, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 10, 'mdo' => (int) 8, 'mtr' => (int) 6, 'cme' => (int) 8, 'egut' => (int) 8, 'ama' => (int) 11, 'nta' => (int) 19, 'nnu' => (int) 7, 'oeu' => (int) 13, 'osa' => (int) 10, 'pax' => (int) 9, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 10, 'ppa' => (int) 9, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 14, 'qlo' => (int) 5, 'rch' => (int) 5, 'rsi' => (int) 8, 'sbr' => (int) 11, 'sbo' => (int) 9, 'sci' => (int) 7, 'sed' => (int) 14, 'sgi' => (int) 6, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 4, 'sly' => (int) 8, 'spe' => (int) 9, 'spa' => (int) 11, 'tar' => (int) 13, 'tha' => (int) 13, 'tca' => (int) 5, 'esa' => (int) 10, 'tpr' => (int) 7, 'twi' => (int) 10, 'ugi' => (int) 9, 'vma' => (int) 3, 'vmu' => (int) 8, 'zma' => (int) 19 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb427130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1